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Tools

Explore tools developed by and/or used in VHP4Safety.

You can search for a tool that you know using the search box below. Alternatively, you can filter the tools with respect to the case studies' flow step that they belong to and/or the regulatory question that they are associated with. Use the "Filters" button to show filter options, then "OK" to see results, and click "X" to reset the filters.

Contribution and Feedback

We welcome and appreciate any feedback on this catalog of tools or the individual tools listed in it. We also appreciate receiving requests for other tools that you are aware of and deem relevant to this catalog. For these contribution and feedback, please feel free to create an issue at our repository.

Developed by VHP Hosted by VHP
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    AOP-Builder Developed by VHP

    A tool that supports Adverse Outcome Pathway (AOP) development by extracting key scientific entities and their relationships from literature.

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    AOP-Suite Developed by VHP Hosted by VHP

    A web-based tool for building, visualizing and analyzing Adverse Outcome Pathway (AOP) networks.

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    AOP-Wiki API Developed by VHP Hosted by VHP

    A grlc-generated REST API that exposes a curated set of SPARQL queries against the AOP-Wiki RDF endpoint as Swagger-documented HTTP endpoints, giving programmatic access to AOP-Wiki content without writing SPARQL.

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    AOP-Wiki RDF Dashboard Developed by VHP Hosted by VHP

    A web dashboard for monitoring and analysing the AOP-Wiki RDF knowledge base over time, with entity counts, Key Event component distributions, ontology usage, AOP completeness, network density, and author contributions, plus CSV download of every plot's underlying data.

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    AOP-Wiki Snorql UI Developed by VHP Hosted by VHP

    A web-based SPARQL query interface for the AOP-Wiki RDF endpoint, with CodeMirror syntax highlighting, on-the-fly example queries pulled from GitHub, shareable permalinks, and CSV/JSON/XML export.

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    ArrayAnalysis Developed by VHP Hosted by VHP

    A user-interface for preprocessing and statistically analyzing RNA-sequencing and microarray transcriptomics data.

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